Publications list            
Showing 691 - 720 (752 total)
691
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Peter E. Smouse. Reticulation inside the species boundary. In JCLA, Vol. 17:165-173, 2000.
Note: http://www.bio.umontreal.ca/legendre/reprints/Special_Section.pdf.
       

692
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Peter H. A. Sneath. Reticulate Evolution in Bacteria and Other Organisms: How Can We Study It? In JCLA, Vol. 17:360-368, 2000.
Note: http://www.bio.umontreal.ca/legendre/reprints/Special_Section.pdf.
       

693
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François-Joseph Lapointe. How to account for reticulation events in phylogenetic analysis: A review of distance-based methods. In Journal of Classification, Vol. 17:175-184, 2000.
Keywords: abstract network, evaluation, from distances, phylogenetic network, Program Pyramids, Program SplitsTree, Program T REX, pyramid, reconstruction, reticulogram, split network, survey, weak hierarchy.
Note: http://dx.doi.org/10.1007/s003570000016.
       

694
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Mikkel H. Schierup and Jotun Hein. Recombination and the molecular clock. In MBE, Vol. 17(10):1578-1579, 2000.
Note: http://www.birc.dk/Publications/Articles/Schierup_2000c.pdf.
       

695
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Korbinian Strimmer and Vincent Moulton. Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models. In MBE, Vol. 17(6):875-881, 2000.
Keywords: bayesian, likelihood, median network, split network, statistical model.
Note: http://mbe.oxfordjournals.org/cgi/content/abstract/17/6/875.
       

696
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Shizhong Xu. Phylogenetic Analysis Under Reticulate Evolution. In MBE, Vol. 17(6):897-907, 2000.
Keywords: from distances, phylogenetic network, phylogeny, reconstruction, statistical model.
Note: http://mbe.oxfordjournals.org/cgi/content/abstract/17/6/897.
       

697
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Mark Clement, David Posada and Keith A. Crandall. TCS: a computer program to estimate gene genealogies. In MOLE, Vol. 9:1657-1659, 2000.
Keywords: from sequences, parsimony, phylogenetic network, phylogeny, Program TCS, reconstruction, software, statistical parsimony.
Note: http://darwin.uvigo.es/download/papers/08.tcs00.pdf.
       
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698
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Hans-Jürgen Bandelt, Vincent Macaulay and Martin Richards. Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA. In MPE, Vol. 16:8-28, 2000.
Keywords: from sequences, from splits, median network, phylogenetic network, phylogeny, reconstruction.
Note: http://www.stats.gla.ac.uk/~vincent/papers/speedy.pdf.
       
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699
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Katharina Huber, Elizabeth E. Watson and Mike Hendy. An Algorithm for Constructing Local Regions in a Phylogenetic Network. In MPE, Vol. 19(1):1-8, 2000.
Keywords: abstract network, median network, phylogenetic network, phylogeny, reconstruction, split.
Note: http://dx.doi.org/10.1006/mpev.2000.0891.
       
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700
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Tao Sang and Yang Zhong. Testing Hybridization Hypotheses Based on Incongruent Gene Trees. In Systematic Biology, Vol. 49(3):422-434, 2000.
Keywords: bootstrap, from rooted trees, hybridization, lateral gene transfer, lineage sorting, phylogenetic network, phylogeny, reconstruction, statistical model.
Note: http://dx.doi.org/10.1080/10635159950127321.
       

701
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Arne Röhl. Phylogenetische Netzwerke. PhD thesis, Universität Hamburg, Germany, 1999.
Note: http://www.sub.uni-hamburg.de/opus/volltexte/1999/53/html/Phylogenetische_Netzwerke.html.
       

702
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Nicholas C. Grassly and Andrew Rambaut. Treevolve, a program to simulate the evolution of DNA sequences under different population dynamic scenarios. 1999.
Keywords: generation, phylogenetic network, phylogeny, population genetics, Program Treevolve, software.
Note: http://evolve.zoo.ox.ac.uk/software/treevolve/manual.php.
       

703
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Vincent Berry and David Bryant. Faster reliable phylogenetic analysis. In RECOMB99, Pages 59-68, 1999.
Keywords: abstract network, from quartets, phylogenetic network, phylogeny, polynomial, Program SplitsTree, reconstruction, split network, weakly compatible.
Note: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.95.9151.
       

704
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Jean-Christophe Aude, Yolande Diaz-Lazcoz, Jean-Jacques Codani and Jean-Loup Risler. Applications of the Pyramidal Clustering Method to Biological Objects. In CC, Vol. 23(3-4):303-315, 1999.
Keywords: from distances, phylogenetic network, phylogeny, Program Pyramids, pyramid, reconstruction, software, visualization.
Note: http://dx.doi.org/10.1016/S0097-8485(99)00006-6.
       

705
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Hans-Jürgen Bandelt, Peter Forster and Arne Röhl. Median-joining networks for inferring intraspecies phylogenies. In MBE, Vol. 16(1):37-48, 1999.
Keywords: from sequences, median network, MedianJoining, Program Network, reconstruction, software.
Note: http://mbe.oxfordjournals.org/cgi/content/abstract/16/1/37.
       

706
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W. Ford Doolittle. Phylogenetic Classification and the Universal Tree. In Science, Vol. 284:2124-2128, 1999.
Note: http://cas.bellarmine.edu/tietjen/Ecology/phylogenetic_classification_and_.htm.
       
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707
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Bin Ma, Lusheng Wang and Ming Li. Fixed topology alignment with recombination. In CPM98, Vol. 1448:174-188 of LNCS, springer, 1998.
Keywords: approximation, explicit network, from network, from sequences, galled tree, inapproximability, phylogenetic network, phylogeny, recombination.
Note: http://dx.doi.org/10.1007/BFb0030789.
       

708
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Daniel H. Huson. SplitsTree: analyzing and visualizing evolutionary data. In BIO, Vol. 14(1):68-73, 1998.
Keywords: abstract network, phylogenetic network, phylogeny, Program SplitsTree, software, split network.
Note: http://bioweb.pasteur.fr/docs/doc-gensoft/splitstree/splitstree.ps.
       

709
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John Kececioglu and Dan Gusfield. Reconstructing a history of recombinations from a set of sequences. In DAM, Pages 239-260, 1998.
Keywords: from sequences, NP complete, polynomial, recombination, reconstruction.
Note: http://citeseer.ist.psu.edu/76600.html.
       

710
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Roderic D.M. Page and Michael A. Charleston. Trees within trees: phylogeny and historical associations. In TEE, Vol. 13(9):356-359, 1998.
Keywords: duplication, explicit network, from rooted trees, from species tree, lateral gene transfer, phylogenetic network, phylogeny, reconstruction, survey.
Note: http://taxonomy.zoology.gla.ac.uk/rod/papers/tree.pdf.
       

711
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David Bryant. Building Trees, Hunting for Trees, and Comparing Trees: theory and method in phylogenetic analysis. PhD thesis, Dept. Mathematics, University of Canterbury, New Zealand, 1997.
Note: http://citeseer.ist.psu.edu/685475.html.
       

712
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Andreas W. M. Dress, Katharina Huber and Vincent Moulton. Some Variations on a Theme by Buneman. In ACOM, Vol. 1:339-352, 1997.
Note: http://dx.doi.org/10.1007/BF02558485.
       

713
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Andreas W. M. Dress, Mike Hendy, Katharina Huber and Vincent Moulton. On the number of vertices and edges in the Buneman graph. In ACOM, Vol. 1:329-337, 1997.
Keywords: abstract network, median network, phylogenetic network, phylogeny, split.
Note: http://dx.doi.org/10.1007/BF02558484.
       

714
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Walter M. Fitch. Networks and viral evolution. In JME, Vol. 44(Suppl. 1):S65-S75, 1997.
Keywords: netting, parsimony, phylogenetic network, phylogeny, reconstruction.
Note: http://dx.doi.org/10.1007/PL00000059.
       

715
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Wayne P. Maddison. Gene Trees in Species Trees. In Systematic Biology, Vol. 46(3):523-536, 1997.
Keywords: from rooted trees, from species tree, lateral gene transfer, phylogeny, reconstruction, time consistent network.
Note: http://dx.doi.org/10.2307/2413694.
       

716
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Andreas W. M. Dress, Daniel H. Huson and Vincent Moulton. Analyzing and visualizing distance data using SplitsTree. In DAM, Vol. 71(1):95-109, 1996.
Keywords: abstract network, from distances, phylogenetic network, phylogeny, Program SplitsTree, software, split network, visualization.
Note: http://bibiserv.techfak.uni-bielefeld.de/splits/splits.pdf.
       

717
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Paul Marjoram and Robert C. Griffiths. Ancestral inference from samples of DNA sequences with recombination. In JCB, Vol. 3(4):479-502, 1996.
Keywords: ARG, phylogenetic network, phylogeny, statistical model.
Note: http://www.math.canterbury.ac.nz/~r.sainudiin/recomb/JCB_paper.pdf.
       

718
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Rainer Wetzel. Zur Visualisierung abstrakter Ahnlichkeitsbeziehungen. PhD thesis, Universität Bielefeld, Germany, 1995.
Keywords: abstract network, circular split system, visualization.
       

719
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Daniel H. Huson and Rainer Wetzel. Analyzing and visualizing sequence and distance data with SplitsTree V1.0.2. 1995.
Keywords: abstract network, phylogenetic network, phylogeny, Program SplitsTree, reconstruction, software, split network, visualization.
Note: Technical report, http://citeseer.ist.psu.edu/173442.html.
       

720
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Loren H. Rieseberg and James D. Morefield. Character expression, phylogenetic reconstruction, and the detection of reticulate evolution. In P. C. Hoch and A. G. Stephenson editors, Experimental and molecular approaches to plant biosystematics, Pages 333–353, 1995.
Keywords: hybridization, phylogeny, Program Reticlad.
Note: http://www3.botany.ubc.ca/rieseberglab/loren pubs/1995 Chapter in Experimental and Molecular approaches to Plant Biosystematics.pdf.