MastersThesis publications sorted by year 
2015
1
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Quan Nguyen. Likelihood-based Phylogenetic Network Inference by Approximate Structural Expectation Maximization. Master's thesis, University of Helsinki, 2015.  
Keywords: BIC, likelihood, phylogenetic network, phylogeny, Program PhyloDAG, reconstruction, software.
Note: http://urn.fi/URN:NBN:fi-fe2015062910525.
       

2
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Maxime Morgado. Propriétés structurelles et relations des classes de réseaux phylogénétiques. Master's thesis, ENS Cachan, 2015.  
Keywords: compressed network, distinct-cluster network, explicit network, galled network, galled tree, level k phylogenetic network, nested network, normal network, phylogenetic network, phylogeny, regular network, spread, tree child network, tree containment, tree sibling network, tree-based network, unicyclic network.
       

2014
3
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Zhijiang Li. Fixed-Parameter Algorithm for Hybridization Number of Two Multifurcating Trees. Master's thesis, Dalhousie University, Canada, 2014.  
Keywords: agreement forest, explicit network, FPT, from rooted trees, minimum number, phylogenetic network, phylogeny, reconstruction.
Note: http://hdl.handle.net/10222/53976.
       

4
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Julia Matsieva. A Static Formulation of the History Bound Problem. Master's thesis, UC Davis, 2014.  
Keywords: bound, dynamic programming, explicit network, from binary characters, from clusters, phylogenetic network, phylogeny, polynomial.
Note: https://escholarship.org/uc/item/3741t064.
       

2012
5
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Adrià Alcalà Mena. Trivalent Graph isomorphism in polynomial time. Master's thesis, Universidad de Cantabria, Spain, 2012.  
Keywords: distance between networks, explicit network, from network, isomorphism, phylogenetic network, phylogeny, polynomial, Program SAGE.
Note: http://arxiv.org/abs/1209.1040.
       

6
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Matthieu Willems. Un nouvel algorithme pour l'inférence de réseaux d'hybridation. Master's thesis, Université du Québec à Montréal, Canada, 2012.  
Keywords: explicit network, from distances, heuristic, phylogenetic network, phylogeny, reconstruction.
Note: http://www.archipel.uqam.ca/5015/.
       

2011
7
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Puspal Bhabak. Improving the approximation ratio of the maximum agreement forest (MAF) on k trees and estimating the approximation ratio of the acyclic-MAF on k trees. Master's thesis, University of Windsor, Canada, 2011.  
Keywords: agreement forest, approximation, explicit network, from rooted trees, phylogenetic network, phylogeny, reconstruction.
Note: http://scholar.uwindsor.ca/cgi/viewcontent.cgi?article=1315&context=etd.
       

8
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Benjamin Albrecht. Fast Computation of Hybridization Networks. Master's thesis, University of Tübingen, Germany, 2011.  
Keywords: explicit network, from rooted trees, minimum number, phylogenetic network, phylogeny, reconstruction.
       

2009
9
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Josh Voorkamp né Collins. Rekernelisation Algorithms in Hybrid Phylogenies. Master's thesis, University of Canterbury, New Zealand, 2009.  
Keywords: agreement forest, explicit network, FPT, from rooted trees, from unrooted trees, hybridization, minimum number, phylogenetic network, phylogeny, Program HybridInterleave, reconstruction, software.
Note: http://hdl.handle.net/10092/2852.
       

10

Poornima Venugopal. Improving layout of phylogenetic network produced by PADRE. Master's thesis, University of Texas at Dallas, U.S.A., 2009.  
Keywords: explicit network, phylogenetic network, Program PADRE, visualization.
Note: http://proquest.umi.com/pqdlink?did=2026498501&sid=1&Fmt=2&clientId=176295&RQT=309&VName=PQD.
       

11
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Chris Whidden. A Unifying View on Approximation and FPT of Agreement Forests. Master's thesis, Dalhousie University, Canada, 2009.  
Keywords: agreement forest, approximation, explicit network, FPT, from rooted trees, hybridization, phylogenetic network, phylogeny, reconstruction, SPR distance.
Note: http://web.cs.dal.ca/~whidden/MCSThesis09.pdf.
       

2005
12
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Derek Ruths. Applications of phylogenetic incongruence to detecting and reconstructing interspecific recombination and horizontal gene transfer. Master's thesis, Rice University, U.S.A., 2005.  
Keywords: explicit network, from rooted trees, from species tree, heuristic, phylogenetic network, phylogeny, polynomial, reconstruction.
Note: http://hdl.handle.net/1911/17912.