Who is Who in Phylogenetic Networks

Publications related to 'Program Treevolve' : Treevolve simulates the evolution of DNA sequences under a coalescent model, which allows exponential population growth, population subdivision according to an island model, migration and recombination. It was available at http://evolve.zps.ox.ac.uk/software.html?id=treevolve and can now be found at http://moais.imag.fr/membres/vincent.danjean/deb.html#treevolve>   Order by:   Type | Year

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generation phylogenetic-network phylogeny population-genetics Program-Serial-NetEvolve Program-Treevolve recombination software

2006

1 Patricia Buendia and Giri Narasimhan. Serial NetEvolve: A flexible utility for generating serially-sampled sequences along a tree or recombinant network. In BIO, Vol. 18(22):2313-2314, 2006. Keywords: generation, phylogenetic network, phylogeny, Program Serial NetEvolve, Program Treevolve, recombination, software. Note: http://dx.doi.org/10.1093/bioinformatics/btl387.         Toggle abstract "Summary: Serial NetEvolve is a flexible simulation program that generates DNA sequences evolved along a tree or recombinant network. It offers a user-friendly Windows graphical interface and a Windows or Linux simulator with a diverse selection of parameters to control the evolutionary model. Serial NetEvolve is a modification of the Treevolve program with the following additional features: simulation of serially-sampled data, the choice of either a clock-like or a variable rate model of sequence evolution, sampling from the internal nodes and the output of the randomly generated tree or network in our newly proposed NeTwick format. © 2006 Oxford University Press."

1999

2 Nicholas C. Grassly and Andrew Rambaut. Treevolve, a program to simulate the evolution of DNA sequences under different population dynamic scenarios. 1999. Keywords: generation, phylogenetic network, phylogeny, population genetics, Program Treevolve, software. Note: http://evolve.zoo.ox.ac.uk/software/treevolve/manual.php.