Phylnet tools

RecoPhyNC-online - Recognition of phylogenetic network classes

This tool is an online demo of RecoPhyNC, a Python script which determines whether a phylogenetic network, given as a file containing a list of arcs, is level-k, tree-child, nearly tree-child, genetically stable, reticulation-visible, tree-sibling, compressed or nearly stable.

Please upload a zip file containing all networks you want to analyze:

To test the program, you can use as an example:

this file containing all networks shown in this gallery, published in various articles;
this file containing networks published on the ISIPhyNC website about phylogenetic network subclasses;
any zip file of random phylogenetic networks generated by Random_Ntk_Generator.

The software used for phylogenetic network class recognition is available on GitHub.

This website, Phylnet tools, was built in the context of a Merlion Project between Université Paris-Est Marne-la-Vallée and National University of Singapore, involving Philippe Gambette, Andreas Gunawan, Anthony Labarre, Stéphane Vialette and Louxin Zhang.