Who is Who in Phylogenetic Networks

Publications of Klaus Schliep     Order by:   Type | Year

Associated keywords

abstract-network from-distances from-network from-unrooted-trees phylogenetic-network phylogeny Program-Phangorn reconstruction software split split-network visualization

Article (Journal)

1 Klaus Schliep, Alastair J. Potts, David A. Morrison and Guido W. Grimm. Intertwining phylogenetic trees and networks. In Methods in Ecology and Evolution, Vol. 8(10):1212-1220, 2017. Keywords: abstract network, from network, from unrooted trees, phylogenetic network, phylogeny, split network, visualization. Note: http://dx.doi.org/10.1111/2041-210X.12760.         2 Klaus Schliep. Phangorn: Phylogenetic analysis in R. In Bioinformatics, Vol. 27(4):592-593, 2011. Keywords: abstract network, from distances, phylogenetic network, Program Phangorn, software, split, split network. Note: http://dx.doi.org/10.1093/bioinformatics/btq706.         Toggle abstract "Summary: phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation. Extending the general ML framework, this package provides the possibility of estimating mixture and partition models. Furthermore, phangorn offers several functions for comparing trees, phylogenetic models or splits, simulating character data and performing congruence analyses. © The Author(s) 2010. Published by Oxford University Press."

PhdThesis

3 Klaus Schliep. Some applications of statistical phylogenetics. PhD thesis, Massey University, New Zealand, 2009. Keywords: abstract network, phylogenetic network, Program Phangorn, reconstruction, split network. Note: http://muir.massey.ac.nz/handle/10179/931.