Who is Who in Phylogenetic Networks

Publications of Yukihiro Murakami     Order by:   Type | Year

Associated keywords

cactus-graph characterization cherry-picking distinguishability explicit-network FPT from-distances from-network from-subnetworks galled-tree hybridization isomorphism level-k-phylogenetic-network minimum-number optimal-realization orchard-network orientation parental-hybridization phylogenetic-network phylogeny polynomial population-genetics reconstruction semidirected-network stack-free-network statistical-model tree-based-network tree-child-network tree-child-sequence uniqueness valid-network weakly-displaying

Article (Journal)

1 Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami and Norbert Zeh. Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulation. In TCBB, Vol. 17(1):14-26, 2020. Keywords: hybridization, minimum number, parental hybridization, phylogenetic network, phylogeny, reconstruction, weakly displaying. Note: http://pure.tudelft.nl/ws/portalfiles/portal/71270795/08798653.pdf.         2 Leo van Iersel, Vincent Moulton and Yukihiro Murakami. Reconstructibility of unrooted level-k phylogenetic networks from distances. In AAM, Vol. 120(102075):1-30, 2020. Keywords: from distances, galled tree, level k phylogenetic network, phylogenetic network, phylogeny, reconstruction, uniqueness. Note: https://doi.org/10.1016/j.aam.2020.102075.         3 Momoko Hayamizu, Katharina Huber, Vincent Moulton and Yukihiro Murakami. Recognizing and realizing cactus metrics. In IPL, Vol. 157(105916):1-5, 2020. Keywords: cactus graph, from distances, level k phylogenetic network, optimal realization, polynomial. Note: https://doi.org/10.1016/j.ipl.2020.105916.         4 Yukihiro Murakami, Leo van Iersel, Remie Janssen, Mark Jones and Vincent Moulton. Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks. In BMB, Vol. 81:3823-3863, 2019. Keywords: from subnetworks, level k phylogenetic network, phylogenetic network, phylogeny, reconstruction, tree-child network, uniqueness, valid network. Note: https://doi.org/10.1007/s11538-019-00641-w.

InProceedings

5 Remie Janssen, Mark Jones and Yukihiro Murakami. Combining Networks Using Cherry Picking Sequences. In AlCoB20, Vol. 12099:77-92 of LNCS, Springer, 2020. Keywords: cherry-picking, explicit network, FPT, from network, hybridization, orchard network, phylogenetic network, phylogeny, tree-child network.         6 Remie Janssen and Yukihiro Murakami. Linear Time Algorithm for Tree-Child Network Containment. In AlCoB20, Vol. 12099:93-107 of LNCS, Springer, 2020. Keywords: explicit network, from network, isomorphism, phylogenetic network, phylogeny, polynomial, reconstruction, tree-child network, tree-child sequence. Note: https://doi.org/10.1007/978-3-030-42266-0_8.         7 Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami and Norbert Zeh. Polynomial-Time Algorithms for Phylogenetic Inference Problems. In AlCoB18, Vol. 10849:37-49 of LNCS, Springer, 2018. Keywords: hybridization, minimum number, parental hybridization, phylogenetic network, phylogeny, polynomial, reconstruction, weakly displaying. Note: https://research.tudelft.nl/files/53686721/10.1007_978_3_319_91938_6_4.pdf.

Misc

8 Elizabeth Gross, Leo van Iersel, Remie Janssen, Mark Jones, Colby Long and Yukihiro Murakami. Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes. 2020. Keywords: characterization, distinguishability, explicit network, galled tree, phylogenetic network, population genetics, semidirected network, statistical model, uniqueness. Note: https://arxiv.org/abs/2007.08782.         9 Katharina Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami and Charles Semple. Rooting for phylogenetic networks. 2019. Keywords: explicit network, from network, level k phylogenetic network, orchard network, orientation, phylogenetic network, phylogeny, reconstruction, stack-free network, tree-based network, tree-child network, valid network. Note: https://arxiv.org/abs/1906.07430.