Who is Who in Phylogenetic Networks

Publications of Joan Carles Pons     Order by:   Type | Year

Associated keywords

characterization duplication enumeration explicit-network from-network from-rooted-trees from-subnetworks from-tri-LGT-nets generation lateral-gene-transfer level-k-phylogenetic-network LGT-network loss parsimony phylogenetic-network phylogeny polynomial Program-LGTnetwork Program-PhyloNetwork Program-TCGenerators reconstruction software time-consistent-network tree-based-network tree-child-network uniqueness

2020

1 Joan Carles Pons, Celine Scornavacca and Gabriel Cardona. Generation of Level-k LGT Networks. In TCBB, Vol. 17(1):158-164, 2020. Keywords: explicit network, level k phylogenetic network, LGT network, phylogenetic network, phylogeny.

2019

2 Joan Carles Pons, Charles Semple and Mike Steel. Tree-based networks: characterisations, metrics, and support trees. In JOMB, Vol. 78(4):899-918, 2019. Keywords: characterization, explicit network, from network, phylogenetic network, phylogeny, time consistent network, tree-based network. Note: https://arxiv.org/abs/1710.07836.         3 Gabriel Cardona, Joan Carles Pons and Celine Scornavacca. Generation of Binary Tree-Child phylogenetic networks. In PLoS Computational Biology, Vol. 15(10):e1007440.1-29, 2019. Keywords: enumeration, explicit network, generation, phylogenetic network, phylogeny, Program PhyloNetwork, Program TCGenerators, software, tree-child network. Note: https://doi.org/10.1371/journal.pcbi.1007440.

2017

4 Gabriel Cardona and Joan Carles Pons. Reconstruction of LGT networks from tri-LGT-nets. In JOMB, Vol. 75(6-7):1669-1692, 2017. Keywords: explicit network, from subnetworks, from tri-LGT-nets, LGT network, phylogenetic network, phylogeny, reconstruction, uniqueness. Note: https://doi.org/10.1007/s00285-017-1171-0.         5 Celine Scornavacca, Joan Carles Pons and Gabriel Cardona. Fast algorithm for the reconciliation of gene trees and LGT networks. In JTB, Vol. 418:129-137, 2017. Keywords: duplication, explicit network, from network, from rooted trees, lateral gene transfer, LGT network, loss, parsimony, phylogenetic network, phylogeny, polynomial, reconstruction.

2015

6 Gabriel Cardona, Joan Carles Pons and Francesc Rosselló. A reconstruction problem for a class of phylogenetic networks with lateral gene transfers. In ALMOB, Vol. 10(28):1-15, 2015. Keywords: explicit network, from rooted trees, lateral gene transfer, phylogenetic network, phylogeny, Program LGTnetwork, reconstruction, software, tree-based network. Note: http://dx.doi.org/10.1186/s13015-015-0059-z.