Who is Who in Phylogenetic Networks

Publication no #651   Type :   Html | Bib | Both

Created: 2008-07-25 13:59:34     Modified: 2008-11-23 21:42:30

651 Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. Metrics for phylogenetic networks II: Nodal and triplets metrics. In TCBB, Vol. 6(3):454-469, 2009. Keywords: distance between networks, phylogenetic network, phylogeny. Note: http://dx.doi.org/10.1109/TCBB.2008.127.         Toggle abstract "The assessment of phylogenetic network reconstruction methods requires the ability to compare phylogenetic networks. This is the second in a series of papers devoted to the analysis and comparison of metrics for tree-child time consistent phylogenetic networks on the same set of taxa. In this paper, we generalize to phylogenetic networks two metrics that have already been introduced in the literature for phylogenetic trees: the nodal distance and the triplets distance. We prove that they are metrics on any class of tree- child time consistent phylogenetic networks on the same set of taxa, as well as some basic properties for them. To prove these results, we introduce a reduction/expansion procedure that can be used not only to establish properties of tree-child time consistent phylogenetic networks by induction, but also to generate all tree-child time consistent phylogenetic networks with a given number of leaves. © 2009 IEEE." @Article{CLRV2009b,       AUTHOR = {Cardona, Gabriel and Llabr{\~A}�s, Merc{\~A}� and Rossell{\~A}�, Francesc and Valiente, Gabriel},       TITLE = {Metrics for phylogenetic networks II: Nodal and triplets metrics},       YEAR = {2009},       JOURNAL = {TCBB},       VOLUME = {6},       NUMBER = {3},       PAGES = {454-469},       URL = {http://dx.doi.org/10.1109/TCBB.2008.127},       NOTE = {http://dx.doi.org/10.1109/TCBB.2008.127},       ANNOTE = {BIBUPDATE : 20080725},       KEYWORDS = {distance between networks, phylogenetic network, phylogeny} }