Who is Who in Phylogenetic Networks

Publications related to 'Program SNSA' : SNSA (Super Network-Simulated Annealing) is a Matlab program which takes a set of unrooted trees as input (Newick format) and outputs a supernetwork of those trees. Actually, it creates a split system which can be visualized as a split network in SplitsTree. Available at http://bioinf.cs.ipm.ir/software/snsa/.   Order by:   Type | Year

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Associated keywords

abstract-network from-unrooted-trees heuristic phylogenetic-network phylogeny Program-SNSA reconstruction simulated-annealing software split-network

Article (Journal)

1 Reza Hassanzadeh, Changiz Eslahchi and Wing-Kin Sung. Constructing phylogenetic supernetworks based on simulated annealing. In MPE, Vol. 63(3):738-744, 2012. Keywords: abstract network, from unrooted trees, heuristic, phylogenetic network, phylogeny, Program SNSA, reconstruction, simulated annealing, software, split network. Note: http://dx.doi.org/10.1016/j.ympev.2012.02.009.         Toggle abstract Different partial phylogenetic trees can be derived from different sources of evidence and different methods. One important problem is to summarize these partial phylogenetic trees using a supernetwork. We propose a novel simulated annealing based method called SNSA which uses an optimization function to produce a simple network that still retains a great deal of phylogenetic information. We report the performance of this new method on real and simulated datasets. © 2012 Elsevier Inc.

InProceedings

2 Changiz Eslahchi and Reza Hassanzadeh. New Algorithm for Constructing Supernetworks from Partial Trees. In MCCMB11, Pages 106-107, 2011. Keywords: abstract network, from unrooted trees, heuristic, phylogenetic network, phylogeny, Program SNSA, reconstruction, simulated annealing, split network. Note: http://mccmb.belozersky.msu.ru/2011/mccmb11.pdf#page=106.