Who is Who in Phylogenetic Networks

Publications related to 'haplotype network' : A haplotype network is a phylogenetic network in the context of intraspecific studies, that is when the taxa belong to the same species.   Order by:   Type | Year

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Associated keywords

abstract-network branch-length evaluation explicit-network from-sequences from-unrooted-trees haplotype-network heuristic MedianJoining parsimony phylogenetic-network phylogeny population-genetics Program-Arlequin Program-CombineTrees Program-Network Program-PIRN Program-PopART Program-TCS reconstruction software

Article (Journal)

1 Insa Cassens, Patrick Mardulyn and Michel C. Milinkovitch. Evaluating Intraspecific Network Construction Methods Using Simulated Sequence Data: Do Existing Algorithms Outperform the Global Maximum Parsimony Approach? In Systematic Biology, Vol. 54(3):363-372, 2005. Keywords: abstract network, evaluation, from unrooted trees, haplotype network, parsimony, phylogenetic network, phylogeny, Program Arlequin, Program CombineTrees, Program Network, Program TCS, reconstruction, software. Note: http://www.lanevol.org/LANE/publications_files/Cassens_etal_SystBio_2005.pdf.         2 Jessica W. Leigh and David Bryant. PopART: full-feature software for haplotype network construction. In Methods in Ecology and Evolution, Vol. 6(9):1110-1116, 2015. Keywords: abstract network, from sequences, haplotype network, MedianJoining, phylogenetic network, phylogeny, population genetics, Program PopART, Program TCS, software. Note: http://dx.doi.org/10.1111/2041-210X.12410.

PhdThesis

3 Anthony Labarre. Combinatorial aspects of genome rearrangements and haplotype networks. PhD thesis, Université Libre de Bruxelles, Belgium, 2008. Keywords: abstract network, from unrooted trees, haplotype network, phylogenetic network, phylogeny, reconstruction. Note: http://homepages.ulb.ac.be/~alabarre/publications/phd-thesis.pdf.         4 Sajad Mirzaei. Efficient Algorithms for Trees and Networks in Evolutionary Genomics. PhD thesis, University of Connecticut, 2018. Keywords: branch length, explicit network, haplotype network, heuristic, Program PIRN, reconstruction. Note: https://opencommons.uconn.edu/dissertations/1853.