Publications related to 'Program PADRE' : PADRE is a Java software package allowing the computation and graphical representation of reticulate networks from Multi-Labelled (MuL) Trees. The network is constructed in stages which allows the user flexibility in choosing appropriate elements of the input tree for merging. http://www.uea.ac.uk/cmp/research/cmpbio/PADRE.
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2009
1
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Martin Lott, Andreas Spillner, Katharina Huber and Vincent Moulton. PADRE: A Package for Analyzing and Displaying Reticulate Evolution. In BIO, Vol. 25(9):1199-1200, 2009.  
Keywords: duplication, explicit network, from multilabeled tree, phylogenetic network, phylogeny, Program PADRE, reconstruction, software.
Note: http://dx.doi.org/10.1093/bioinformatics/btp133.
       
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2
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Martin Lott. New Methods for Constructing Phylogenetic Networks from Multi-Labelled Trees. PhD thesis, University of East Anglia, U.K., 2009.  
Keywords: duplication, explicit network, from multilabeled tree, phylogenetic network, phylogeny, Program PADRE, reconstruction, software.
Note: http://www.ic0.net/thesis-martin-final.pdf.
       

3
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Martin Lott, Andreas Spillner, Katharina Huber, Anna Petri, Bengt Oxelman and Vincent Moulton. Inferring polyploid phylogenies from multiply-labeled gene trees. In BMCEB, Vol. 9:216, 2009.  
Keywords: duplication, explicit network, from multilabeled tree, phylogenetic network, phylogeny, Program PADRE, reconstruction.
Note: http://dx.doi.org/10.1186/1471-2148-9-216.
       
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4

Poornima Venugopal. Improving layout of phylogenetic network produced by PADRE. Master's thesis, University of Texas at Dallas, U.S.A., 2009.  
Keywords: explicit network, phylogenetic network, Program PADRE, visualization.
Note: http://proquest.umi.com/pqdlink?did=2026498501&sid=1&Fmt=2&clientId=176295&RQT=309&VName=PQD.
       

5
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Poornima Venugopal and Sergey Bereg. Layout of Phylogenetic Networks and Multi-Labeled Trees. In BIOT'09, Pages 91, 2009.  
Keywords: explicit network, phylogenetic network, phylogeny, Program PADRE, visualization.
Note: http://www.biotconf.org/PDFs/1456.pdf.
       

2007
6
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Katharina Huber, Bengt Oxelman, Martin Lott and Vincent Moulton. Reconstructing the Evolutionary History of Polyploids from Multilabeled Trees. In MBE, Vol. 23(9):1784-1791, 2007.  
Keywords: duplication, explicit network, from multilabeled tree, from trees, phylogenetic network, phylogeny, Program PADRE, reconstruction, software.
Note: http://mbe.oxfordjournals.org/cgi/content/full/23/9/1784.
       
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2006
7
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Vincent Moulton and Katharina Huber. Phylogenetic networks from multi-labelled trees. In JOMB, Vol. 52(5):613-632, 2006.  
Keywords: duplication, explicit network, from multilabeled tree, phylogenetic network, phylogeny, Program PADRE, reconstruction.
Note: http://www.uea.ac.uk/~a043878/jmb.pdf.
       
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