Who is Who in Phylogenetic Networks

Publications of Year 2003

Article (Journal)

1 Daniel H. Huson. What If I Don't Have a Tree? Split Decomposition and Related Models. In Current Protocols in Bioinformatics, Vol. Unit 6.7, 2003. Keywords: abstract network, phylogenetic network, Program SplitsTree, software, split decomposition, split network. Note: http://dx.doi.org/10.1002/0471250953.bi0607s01.         2 Simon R. Myers and Robert C. Griffiths. Bounds on the Minimum Number of Recombination Events in a Sample History. In GEN, Vol. 163:375-394, 2003. Keywords: Program RecMin. Note: http://www.genetics.org/cgi/content/abstract/163/1/375.         3 Kirill Kryukov and Naruya Saitou. Netview: Application Software for Constructing and Visually Exploring Phylogenetic Networks. In Genome Informatics, Vol. 14:280-281, 2003. Keywords: from sequences, phylogenetic network, phylogeny, Program NetView, visualization. Note: http://www.jsbi.org/journal/GIW03/GIW03SS06.pdf.         4 Vassily A. Lyubetsky and Vladimir V. V´yugin. Methods of horizontal gene transfer determination using phylogenetic data. In In Silico Biology, Vol. 3(1-2):17-31, 2003. Note: http://www.bioinfo.de/isb/2003030003/.

InProceedings

5 Dan Gusfield, Satish Eddhu and Charles Langley. Efficient reconstruction of phylogenetic networks with constrained recombination. In CSB03, Pages 363-374, 2003. Keywords: explicit network, from sequences, galled tree, phylogenetic network, phylogeny, recombination, reconstruction. Note: http://wwwcsif.cs.ucdavis.edu/~gusfield/ieeefinal.pdf.         6 Pawel Górecki. Single step reconciliation algorithm for duplication, loss and horizontal gene transfer model. In ECCB03, 2003. Keywords: duplication, explicit network, from rooted trees, from species tree, lateral gene transfer, NP complete, parsimony, phylogenetic network, phylogeny, polynomial, reconstruction. Note: http://www.inra.fr/eccb2003/posters/pdf/short/S_gorecki.ps.         7 Esra Erdem, Vladimir Lifschitz, Luay Nakhleh and Don Ringe. Reconstructing the evolutionary history of Indo-European languages using answer set programming. In PADL03, Vol. 2562:160-176 of LNCS, springer, 2003. Note: http://people.sabanciuniv.edu/~esraerdem/papers/padl03.ps.         8 Louigi Addario-Berry, Mike Hallett and Jens Lagergren. Towards Identifying Lateral Gene Transfer Events. In PSB03, 2003. Keywords: evaluation, from rooted trees, from species tree, lateral gene transfer, phylogenetic network, phylogeny, Program LatTrans, reconstruction. Note: http://www.nada.kth.se/~jensl/AHLPsb.pdf.         9 Luay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret and Anna Tholse. Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. In PSB03, 2003. Keywords: distance between networks, evaluation, phylogenetic network, phylogeny, polynomial, tripartition distance. Note: http://www.cs.rice.edu/~nakhleh/Papers/psb03.pdf.         10 Barbara R. Holland and Vincent Moulton. Consensus networks: A method for visualising incompatibilities in collections of trees. In WABI03, Vol. 2812:165-176 of LNCS, springer, 2003. Keywords: consensus. Note: http://dx.doi.org/10.1093/molbev/msj061.         11 Alix Boc and Vladimir Makarenkov. New Efficient Algorithm for Detection of Horizontal Gene Transfer Events. In WABI03, Vol. 2812:190-201 of LNCS, springer, 2003. Note: http://www.info2.uqam.ca/~makarenv/articles/article_WABI.pdf.         12 Yun S. Song and Jotun Hein. Parsimonious reconstruction of sequence evolution and haplotype blocks: Finding the minimum number of recombination events. In WABI03, Vol. 2812:287-302 of LNCS, springer, 2003. Keywords: minimum number, recombination. Note: http://www.cs.ucdavis.edu/~yssong/Pub/SH-WABI03.pdf.