Valiente Publications of Gabriel Valiente     Order by:   Type | Year
Associated keywords
2014
1
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. The comparison of tree-sibling time consistent phylogenetic networks is graph-isomorphism complete. In The Scientific World Journal, Vol. 2014(254279):1-6, 2014.  
Keywords: abstract network, distance between networks, from network, isomorphism, phylogenetic network, tree sibling network.
Note: http://arxiv.org/abs/0902.4640.
       
Toggle abstract
2012
2
photophotophotophotophoto
Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara and Gabriel Valiente. Faster computation of the Robinson–Foulds distance between phylogenetic networks. In Information Sciences, Vol. 197:77-90, 2012.  
Keywords: distance between networks, explicit network, level k phylogenetic network, phylogenetic network, polynomial, spread.
       
Toggle abstract
2011
3
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. Comparison of Galled Trees. In TCBB, Vol. 8(2):410-427, 2011.  
Note: http://arxiv.org/abs/0906.1166.
       
Toggle abstract
2010
4
photophotophotophotophoto
Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara and Gabriel Valiente. Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks. In CPM10, Vol. 6129:190-201 of LNCS, springer, 2010.  
Keywords: distance between networks, explicit network, level k phylogenetic network, phylogenetic network, polynomial, spread.
Note: http://hdl.handle.net/10119/9859, slides available at http://cs.nyu.edu/parida/CPM2010/MainPage_files/18.pdf.
       
Toggle abstract
5
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. Path lengths in tree-child time consistent hybridization networks. In Information Sciences, Vol. 180(3):366-383, 2010.  
Keywords: distance between networks, phylogenetic network, phylogeny, time consistent network, tree child network.
Note: http://arxiv.org/abs/0807.0087?context=cs.CE.
       
Toggle abstract
6
photophotophotophoto
Miguel Arenas, Mateus Patricio, David Posada and Gabriel Valiente. Characterization of Phylogenetic Networks with NetTest. In BMCB, Vol. 11:268, 2010.  
Keywords: explicit network, galled tree, phylogenetic network, Program NetTest, software, time consistent network, tree child network, tree sibling network, visualization.
Note: http://dx.doi.org/10.1186/1471-2105-11-268, software available at http://darwin.uvigo.es/software/nettest/.
       
Toggle abstract
2009
7
photophotophoto
Gabriel Cardona, Francesc Rosselló and Gabriel Valiente. Comparison of tree-child phylogenetic networks. In TCBB, Vol. 6(4):552-569, 2009.  
Keywords: explicit network, phylogenetic network, phylogeny, Program Bio PhyloNetwork, Program PhyloNetwork, tree child network, tree sibling network.
Note: http://arxiv.org/abs/0708.3499.
       
Toggle abstract
8
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. Metrics for phylogenetic networks I: Generalizations of the Robinson-Foulds metric. In TCBB, Vol. 6(1):46-61, 2009.  
Keywords: distance between networks, explicit network, phylogenetic network, phylogeny, time consistent network, tree child network, tripartition distance.
Note: http://dx.doi.org/10.1109/TCBB.2008.70.
       
Toggle abstract
9
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. Metrics for phylogenetic networks II: Nodal and triplets metrics. In TCBB, Vol. 6(3):454-469, 2009.  
Keywords: distance between networks, phylogenetic network, phylogeny.
Note: http://dx.doi.org/10.1109/TCBB.2008.127.
       
Toggle abstract
10
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. On Nakhleh's metric for reduced phylogenetic networks. In TCBB, Vol. 6(4):629-638, 2009.  
Keywords: distance between networks, phylogenetic network, phylogeny.
Note: Preliminary versions: http://arxiv.org/abs/0809.0110 and http://arxiv.org/abs/0801.2354v1.
       
Toggle abstract
11
photophoto
Francesc Rosselló and Gabriel Valiente. All that Glisters is not Galled. In MBIO, Vol. 221(1):54-59, 2009.  
Note: http://arxiv.org/abs/0904.2448.
       
Toggle abstract
12
photo
Gabriel Valiente. Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R. Pages 184-208, Taylor & Francis/CRC Press, 2009.  
Keywords: counting, distance between networks, galled tree, generation, phylogenetic network, phylogeny, survey, time consistent network, tree child network, tree sibling network.
Note: http://books.google.fr/books?id=F4YIIUWb7yMC.
       

2008
13
photophotophoto
Gabriel Cardona, Francesc Rosselló and Gabriel Valiente. Tripartitions do not always discriminate phylogenetic networks. In MBIO, Vol. 211(2):356-370, 2008.  
Keywords: distance between networks, phylogenetic network, phylogeny, Program Bio PhyloNetwork, tree child network, tripartition distance.
Note: http://arxiv.org/abs/0707.2376, slides available at http://www.newton.cam.ac.uk/webseminars/pg+ws/2007/plg/plgw01/0904/valiente/.
       
Toggle abstract
14
photophotophoto
Gabriel Cardona, Francesc Rosselló and Gabriel Valiente. A Perl Package and an Alignment Tool for Phylogenetic Networks. In BMCB, Vol. 9:175, 2008.  
Keywords: distance between networks, phylogenetic network, phylogeny, Program Bio PhyloNetwork, tree child network, tree sibling network.
Note: http://dx.doi.org/10.1186/1471-2105-9-175.
       
Toggle abstract
15
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. A Distance Metric for a Class of Tree-Sibling Phylogenetic Networks. In BIO, Vol. 24(13):1481-1488, 2008.  
Keywords: distance between networks, phylogenetic network, phylogeny, polynomial, tree sibling network.
Note: http://dx.doi.org/10.1093/bioinformatics/btn231.
       
Toggle abstract
16
photophotophotophoto
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló and Gabriel Valiente. Phylogenetic Networks: Justification, Models, Distances and Algorithms. In VI Jornadas de Matemática Discreta y Algorítmica (JMDA'08), 2008.  
Keywords: distance between networks, mu distance, phylogenetic network, phylogeny, polynomial, survey, time consistent network, tree child network, tripartition distance, triplet distance.
Note: http://bioinfo.uib.es/media/uploaded/jmda2008_submission_61-1.pdf.
       

17
photophotophoto
Miguel Arenas, Gabriel Valiente and David Posada. Characterization of reticulate networks based on the coalescent with recombination. In MBE, Vol. 25(12):2517-2520, 2008.  
Keywords: coalescent, evaluation, explicit network, galled tree, phylogenetic network, phylogeny, Program Recodon, regular network, simulation, tree child network, tree sibling network.
Note: http://dx.doi.org/10.1093/molbev/msn219.
       
Toggle abstract
18
photophotophoto
Gabriel Cardona, Francesc Rosselló and Gabriel Valiente. Extended Newick: It is Time for a Standard Representation. In BMCB, Vol. 9:532, 2008.  
Keywords: evaluation, explicit network, phylogenetic network, Program Bio PhyloNetwork, Program Dendroscope, Program NetGen, Program PhyloNet, Program SplitsTree, Program TCS, visualization.
Note: http://bioinfo.uib.es/media/uploaded/bmc-2008-enewick-sub.pdf.
       

2006
19
photophotophotophoto
Tetsuo Asano, Patricia Evans, Ryuhei Uehara and Gabriel Valiente. Site Consistency in Phylogenetic Networks with Recombination. In C. S. Iliopoulos, K. Park and K. Steinhöfel editors, Algorithms in Bioinformatics, Vol. 6:15-26 of Texts in Algorithmics, College Publications, 2006.